PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G359400.1
Common NameB456_007G359400, LOC105761639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 284aa    MW: 32100.9 Da    PI: 6.7269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G359400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-192878155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a++ a+++l+g
  Gorai.007G359400.1 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDDAARRLYG 78
                        68*****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.00E-322888No hitNo description
PfamPF008477.3E-132878IPR001471AP2/ERF domain
SMARTSM003802.3E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6162986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302987IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212987IPR016177DNA-binding domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDSYKRSPLK PWKKGPTRGK GGPQNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD DAARRLYGPE AYLNLPHLQR IPTTTTTNLS NKSSTQKFKW IPSNNFVSMF  120
PSSSPGLLNI NAQPSVHVIH QRLQELKNNG VLKTKTDTQS KNIADDVQMK EKDVVGVSSD  180
KPQIDLHEFL QQLGIKKDEK KQCEEEAVVN NNDDAESTLT AMDSTMKDYY DELVPFGENS  240
SFNWDAMIEM HGGVDGFHGV EASFQVHDHG YEEDLAFPTI WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182986260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434958.10.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-86DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0D2PJR30.0A0A0D2PJR3_G
STRINGVIT_08s0007g08150.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-75ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]